TY - JOUR A1 - Bharadwaj, A A1 - Singh, D A1 - Ritz, A A1 - Tegge, A A1 - Poirel, C A1 - Kraivkivski, P A1 - Adames, N A1 - Luther, K A1 - Kale, S A1 - Peccoud, J A1 - Tyson, T A1 - Murali, T T1 - GraphSpace: stimulating interdisciplinary collaborations in network biology Y1 - 2017/10/01 N1 - R834998 JF - BIOINFORMATICS J1 - BIOINFORMATICS J2 - LECT NOTES COMPUT SC J3 - METHOD BIOCHEM ANAL VL - 33 IS - 19 SP - 3134 EP - 3436 ER - TY - JOUR A1 - Larkin, A L A1 - Rodrigues, R R A1 - Murali, T M A1 - Rajagopalan, P T1 - Designing a multicellular organotypic 3D liver model with a detachable, nanoscale polymeric space of Disse. Y1 - 2013/11/ N1 - R834998 JF - TISSUE ENGINEERING PART C: METHODS VL - 19 IS - 11 SP - 875 EP - 884 ER - TY - JOUR A1 - Lasher, C D A1 - Rajagopalan, P A1 - Murali, T M T1 - Summarizing cellular responses as biological process networks Y1 - 2013/07/29 N1 - R834998 JF - BMC SYSTEMS BIOLOGY VL - 7 SP - 68 ER - TY - JOUR A1 - Rajagopalan, P A1 - Kasif, S A1 - Murali, T M T1 - Systems biology characterization of engineered tissues. Y1 - 2013/07/ N1 - R834998 JF - ANNUAL REVIEW OF BIOMEDICAL ENGINEERING J1 - ANNU REV BIOMED ENG VL - 15 SP - 55 EP - 70 ER - TY - JOUR A1 - Rita, A A1 - Poirel, C A1 - Tegge, A A1 - Sharp, N A1 - Simmons, K A1 - Powell, A A1 - Kale, S A1 - Murali, T T1 - Pathways on demand: automated reconstruction of human signaling networks Y1 - 2016/03/03 N1 - R834998 JF - SYSTEMS BIOLOGY AND APPLICATIONS VL - 2 IS - 16002 ER - TY - JOUR A1 - Sam, S A A1 - Teel, J A1 - Tegge, A N A1 - Bharadwaj, A A1 - Murali, T M T1 - XTalkDB: a database of signaling pathway crosstalk. Y1 - 2017/01/4 N1 - R834998 JF - NUCLEIC ACIDS RESEARCH J1 - NUCLEIC ACIDS RES VL - 45 IS - D1 SP - D432 EP - D439 ER - TY - JOUR A1 - Tegge, A N A1 - Sharp, N A1 - Murali, T M T1 - XTALK: a path-based approach to identifying crosstalk between signaling pathways. Y1 - 2016/01/15 N1 - R834998 JF - BIOINFORMATICS J1 - BIOINFORMATICS J2 - LECT NOTES COMPUT SC J3 - METHOD BIOCHEM ANAL VL - 32 IS - 2 SP - 242 EP - 251 ER - TY - JOUR A1 - Tegge, A A1 - Rodrigues, R A1 - Larkin, A A1 - Murali, T A1 - Pagagopalan, P T1 - Transcriptomic Analysis of Hepatic Cells in Multicellular Organotypic Liver Models Y1 - 2018/07/27 N1 - R834998 JF - NATURE J1 - NATURE VL - 8 IS - 11306 ER - TY - JOUR A1 - Vu, L T A1 - Less, R R A1 - Rajagopalan, P T1 - The promise of organotypic hepatic and gastrointestinal models. Y1 - 2014/08/ N1 - R834998 JF - TRENDS IN BIOTECHNOLOGY J1 - TRENDS BIOTECHNOL VL - 32 IS - 8 SP - 406 EP - 413 ER - TY - JOUR A1 - Vu, L A1 - Orbach, S A1 - Ray, W A1 - Cassin, M E A1 - Rajagopalan, P A1 - Helm, R T1 - The hepatocyte proteome in organotypic rat liver models and the influence of the local microenvironment Y1 - 2017/06/17 N1 - R834998 JF - PROTEOME SCIENCE VL - 15 IS - 12 ER -